Bøker av Ken Youens-Clark

Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and researchers who've never learned basic programming skills. This practical guide shows postdoc bioinformatics professionals and students how to exploit the best parts of Python to solve problems in biology while creating documented, tested, reproducible software.Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates not only how to write effective Python code but also how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools??including linters, formatters, type checkers, and tests??to create documented and tested programs. You'll also tackle 14 challenges in Rosalind, a problem-solving platform for learning bioinformatics and programming.Create command-line Python programs to document and validate parametersWrite tests to verify refactor programs and confirm they're correctAddress bioinformatics ideas using Python data structures and modules such as BiopythonCreate reproducible shortcuts and workflows using makefilesParse essential bioinformatics file formats such as FASTA and FASTQFind patterns of text using regular expressionsUse higher-order functions in Python like filter(), map(), and reduce()

A long journey is really a lot of little steps. The same is true when you're learning Python, so you may as well have some fun along the way! Written in a light-hearted style with entertaining exercises that build powerful skills, Tiny Python Projects takes you from amateur to Pythonista as you create 19 bitesize programs. Key Features· Write command-line Python programs· Process a variety of command-line arguments, options, and flags· Write and run tests for programs and functions· Manipulate Python data structures including strings, lists, tuples, and dictionaries For readers with beginning programming skills in Python or another language.