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For over two decades, Functional Analytic Psychotherapy (FAP) has benefited clients with disorders as varied as depression, PTSD, and fibromyalgia. This book presents a conceptual, clinical framework for FAP and offers ethical guidelines.
This major new edition features many topics not covered in the original, including graphical models, random forests, and ensemble methods. As before, it covers the conceptual framework for statistical data in our rapidly expanding computerized world.
This book presents the Riemann Hypothesis, connected problems, and a taste of the body of theory developed towards its solution. The appendices include a selection of original papers that encompass the most important milestones in the evolution of theory connected to the Riemann Hypothesis.
This book sets forth a set of truly controversial and astonishing theories: First, it proposes that below the surface of the earth is a biosphere of greater mass and volume than the biosphere the total sum of living things on our planet's continents and in its oceans.
From 1976 to the beginning of the millennium-covering the quarter-century life span of this book and its predecessor-something remarkable has happened to market response research: it has become practice.
"...the great feature of the book is that anyone can read it without excessive head scratching...You'll find plenty here to keep you occupied, amused, and informed. -IAN STEWART, NEW SCIENTIST"...a delightful look at numbers and their roles in everything from language to flowers to the imagination."
The work reviewed in this book represents the synthesis of two important developments in modelling of complex stochastic phenomena. The book gives a thorough and rigorous mathematical treatment of the underlying ideas, structures, and algorithms.
This detailed volume presents status and management protocols with the objective of identifying proper guidelines and materials for research related to the most common malignant neoplasm in the thyroid gland, papillary thyroid carcinoma.
Part I: Strategies to Induce ROS Production 1. Modification of Chloroplast Antioxidant Capacity by Plastid Transformation Shengchun Li, Pan Shen, Bipeng Wang, Xiujie Mu, Mimi Tian, Tao Chen, and Yi Han 2. Analysis of Ascorbate Metabolism in Arabidopsis under High-Light-Stress Takanori Maruta and Takahiro Ishikawa 3. Genetic Manipulation of Reactive Oxygen Species (ROS) Homeostasis Utilizing CRISPR/Cas9-Based Gene Editing in Rice Sheng Xu, Tao Chen, Mimi Tian, Marie-Sylviane Rahantaniaina, Linlin Zhang, Ren Wang, Wei Xuan, and Yi Han 4. Studying Plant Stress Reactions In Vivo by PAM Chlorophyll Fluorescence Imaging Alexey Shapiguzov and Jaakko Kangasjärvi Part II: Methods to Visualize ROS and to Detect Changes in Redox Homeostasis 5. Live Monitoring of ROS-Induced Cytosolic Redox Changes with roGFP2-Based Sensors in Plants José Manuel Ugalde, Lara Fecker, Markus Schwarzländer, Stefanie J. Müller-Schüssele, and Andreas J. Meyer 6. Quantitative Measurement of Ascorbate and Glutathione by Spectrophotometry Graham Noctor and Amna Mhamdi 7. Measurement of NAD(P)H and NADPH-Generating Enzymes Amna Mhamdi, Frank Van Breusegem, and Graham Noctor 8. Quantitative Analysis for ROS-Producing Activity and Regulation of Plant NADPH Oxidases in HEK293T Cells Sachie Kimura, Hidetaka Kaya, Kenji Hashimoto, Michael Wrzaczek, and Kazuyuki Kuchitsu Part III: Small-Scale Targeted Analysis of ROS Accumulation during Stress and Effects on Plant Physiology 9. Estimation of the Level of Abasic Sites in Plant mRNA Using Aldehyde Reactive Probe Jagna Chmielowska-Bąk, Karolina Izbiańska-Jankowska, and Joanna Deckert 10. A Simplified Method to Assay Protein Carbonylation by Spectrophotometry Corentin Moreau and Emmanuelle Issakidis-Bourguet 11. In Vitro Biochemical Analysis of Recombinant Plant Proteins under Oxidation Zeya Chen and Jingjing Huang 12. Methods to Analyze the Redox Reactivity of Plant Proteins Thualfeqar Al-Mohanna, George V. Popescu, and Sorina C. Popescu 13. Determination of ROS-Induced Lipid Peroxidation by HPLC-Based Quantification of Hydroxy Polyunsaturated Fatty Acids Brigitte Ksas and Michel Havaux 14. Detection of Lipid Peroxidation-Derived Free Azelaic Acid, a Biotic Stress Marker and Other Dicarboxylic Acids in Tobacco by Reversed Phase HPLC-MS under Non-Derivatized Conditions Attila L. Ádám, György Kátay, András Künstler, and Lóránt Király
1. RNP-Based Control Systems for Genetic Circuits in Synthetic Biology Beyond CRISPR Trevor. R Simmons, Andrew D. Ellington, and Lydia M. Contreras 2. Computational Design of RNA Toehold-Mediated Translation Activators Kaiyue Wu, Zhaoqing Yan, and Alexander A. Green 3. Design of RNA-Based Translational Repressors Seongho Hong, Dongwon Park, Soma Chaudhary, Griffin McCutcheon, Alexander A. Green, and Jongmin Kim 4. Design of Ribocomputing Devices for Complex Cellular Logic Griffin McCutcheon, Soma Chaudhary, Seongho Hong, Dongwon Park, Jongmin Kim, and Alexander A. Green 5. Computational Design of Small Transcription Activating RNAs (STARs) Baiyang Liu and James Chappell 6. Design and Assembly of Multi-Level Transcriptional and Translational Regulators for Stringent Control of Gene Expression F. Veronica Greco, Thea Irvine, Claire S. Grierson, and Thomas E. Gorochowski 7. Model-Based Design of Synthetic Antisense RNA for Predictable Gene Repression Tae Seok Moon 8. Design of a Toolbox of RNA Thermometers Shaunak Sen, Abhilash Patel, and Krishan Kumar Gola 9. Development of Synthetic Riboswitches to Guide the Evolution of Metabolite Production in Microorganisms Minsun Kim, Sungho Jang, and Gyoo Yeol Jung 10. Efficient Method to Identify Synthetic Riboswitches Using RNA-Based Capture-SELEX Combined with In Vivo Screening Janice Kramat and Beatrix Suess 11. RNA Design Principles for Riboswitches that Regulate RNase P-Mediated tRNA Processing Anna Ender, Peter Stadler, Mario Mörl, and Sven Findeiß 12. Design, Characterization, and Application of Targeted Gene Activation in Bacteria Using a Modular CRISPRa System Maria Claudia Villegas Kcam and James Chappell 13. Reprogramming TracrRNAs for In Vitro RNA Detection and In Vivo Transcriptional Recording Chunlei Jiao and Chase L. Beisel 14. Harnessing CRISPR-Cas9 for Epigenetic Engineering Rosa S. Guerra-Resendez and Isaac B. Hilton 15. RNA Structure Prediction, Analysis, and Design: An Introduction to Web-Based Tools Raphael Angelo I. Zambrano, Carmen Hernandez-Perez, and Melissa K. Takahashi 16. Single-Molecule FRET Studies of RNA Structural Rearrangements and RNA-RNA Interactions Ewelina M. Małecka, Boyang Hua, and Sarah A. Woodson 17. Cotranscriptional RNA Chemical Probing
Part I: Animal Experimentation1. Experimental Diets (Normocaloric and Hypercaloric Diets) Laís Marinho Aguiar, Juliana Kelly da Silva Maia, Cinthia Baú Betim Cazarin 2. Measures of Food Intake, Body Weight Gain, and Energy Efficiency in Mice - Cíntia Reis Ballard and Cinthia Baú Betim Cazarin 3. The assessment of glucose homeostasis in rodents: Glucose, Insulin and Pyruvate Tolerance Tests Nathalia R. V. Dragano and Edward Milbank 4. Histopathological Evaluation of Steatohepatitis in Animal ExperimentsYoshihisa Takahashi, Erdenetsogt Dungubat, Toshio Fukusato 5. Quantification of short-chain fatty acids in fecesMirella Romanelli Vicente Bertolo, and Stanislau Bogusz Junior 6. Quantification of non-esterified fatty acids in serum and plasmaMirella Romanelli Vicente Bertolo, and Stanislau Bogusz Junior 7. Lipid Peroxidation (TBARS) in biological samples Lilian R. B. Mariutti 8. Extraction of Bile Acids from Biological Samples and Quantification Using Ultra-High-Performance Liquid Chromatography-Orbitrap Mass Spectrometry Shota Hori, Hongxia Liu, Riho Yamada, Shun Ichitsubo, Ayana Sakaguchi, Fumika Yokoyama, and Satoshi Ishizuka 9. Glycogen measurementCavaglieri, C.R.; Silva, C.A.; and Bernardes, C.F. 10. Evaluation of the minerals and trace elements in the biological samplesDuygu Aydemir and Nuriye Nuray Ulusu 11. Microbiome Evaluation Alba Rodríguez-Nogales, Antonio Jesús Ruiz-Malagón, Jose Alberto Molina-Tijeras, Maria Elena Rodríguez-Cabezas, Julio Gálvez 12. The GSH colorimetric method as measurement of antioxidant status in serum and rodent tissues Milena Morandi Vuolo, Juliana Kelly Silva Maia, Ângela Giovana Batista 13. Guidance for designing a preclinical bioavailability study of bioactive compoundsHelena Dias de Freitas Queiroz Barros, Cinthia Baú Betim Cazarin, Mario Roberto Maróstica Junior Part II: Clinical Trials14. Protocols related to Nutritional Anamnesis in Head and Neck Cancer PatientsJudith Büntzel and Jens Büntzel 15. Food Diary, Food Frequency Questionnaire, and 24-hour dietary recall Luisa Saravia, Paula Moliterno, Estela Skapino, and Luis A. Moreno 16. The Use of Questionnaires to Measure Appetite James H Hollis 17. Protocols for the Use of Indirect Calorimetry in Clinical Research Katherine L Ford, Camila LP Oliveira, Stephanie Ramage, and Carla M Prado 18. Anthropometric Assessment Methods for Adults and Older PeopleThalita Cremonesi Pereira and Cinthia Baú Betim Cazarin 19. MRI-based Body Composition AnalysisMagnus Borga, André Ahlgren, and Sarah Weston 20. Functional tests for assessing human beta-cell function and insulin sensitivityMarcelo Miranda de Oliveira Lima and Bruno Geloneze 21. Maximum oxygen consumption - VO2max laboratory assessment Mara Patrícia Traina Chacon-Mikahil, Alex Castro, Danilo dos Santos Caruso, and Arthur Fernandes Gáspari 2. 2Muscle and Fat Biopsy and Metabolomics Cláudia Regina Cavaglieri, Mara Patrícia Traina Chacon-Mikahil., Renata Garbellini Duft, Ivan Luiz Padilha Bonfante, Arthur Fernandes Gáspari, and Alex Castro
Preface...Table of Contents...Contributing Authors...1. Proteoforms and Proteoform Families: Past, Present, and Future Lloyd M. Smith2. Membrane Ultrafiltration-Based Sample Preparation Method and Sheath-Flow CZE-MS/MS for Top-Down ProteomicsZhichang Yang and Liangliang Sun3. Size Exclusion Chromatography Strategies and MASH Explorer for Large Proteoform CharacterizationTimothy N. Tiambeng, Zhijie Wu, Jake A. Melby, and Ying Ge4. RPLC-RPLC-MS/MS for Proteoform IdentificationKellye A. Cupp-Sutton, Zhe Wang, Dahang Yu, and Si Wu5. Monolithic Materials-Based RPLC-MS for Proteoform Separation and IdentificationYu Liang, Lihua Zhang, and Yukui Zhang6. Capillary Isoelectric Focusing: Mass Spectrometry Method for the Separation and Online Characterization of Monoclonal Antibody Charge Variants at Intact and Subunit LevelJun Dai, Qiangwei Xia, and Chengjie Ji7. Proteoform Analysis and Construction of Proteoform Families in Proteoform SuiteLeah V. Schaffer, Michael R. Shortreed, and Lloyd M. Smith8. Top-Down Mass Spectrometry Data Analysis Using TopPIC SuiteIn Kwon Choi and Xiaowen Liu9. Accurate Proteoform Identification and Quantitation Using pTop 2.0Rui-Xiang Sun, Rui-Min Wang, Lan Luo, Chao Liu, Hao Chi, Wen-Feng Zeng, and Si-Min He10. Proteoform Identification and Quantification using Intact Protein Database Search Engine ProteinGoggleSuideng Qin and Zhixin Tian11. Mass Deconvolution of Top-Down Mass Spectrometry Datasets by FLASHDeconvKyowon Jeong, Jihyung Kim, and Oliver Kohlbacher12. Deconvolving Native and Intact Protein Mass Spectra with UniDecMarius M. Kostelic and Michael T. Marty13. Discovery of Unknown Post-Translational Modifications by Top-Down Mass SpectrometryJesse W. Wilson and Mowei Zhou14. Determining Copper and Zinc Content in Superoxide Dismutase using Electron Capture Dissociation under Native Spray ConditionsRachel Franklin, Michael Hare, and Joseph S. Beckman15. Surface-Induced Dissociation for Protein Complex CharacterizationSophie R. Harvey, Gili Ben-Nissan, Michal Sharon, and Vicki H. WysockiSubject Index List...
This volume looks at the framework in which different scientific disciplines are integrated into the latest studies in behavioral neurogenetics, and covers new approaches toward understanding the system that controls behavior across the animal kingdom. automated behavior analysis using a YOLO-based object detection system;
Recent developments in lesion-symptom mapping (LSM) have spurred rapid growth. The chapters cover the definition and types of brain lesions, how to prepare them for analysis, standard LSM methods, network-based LSM methods, and approaches of transient lesions induced by brain stimulation.
The collected research methods and protocols include the dissection of Notch functional sites, Notch regulators, Notch activity reporters and analysis, roles of Notch in development and diseases, wet and dry lab tools and studies, and bioinformatics analysis.
This book brings together a unique collection of protocols that cover novel and specialized techniques as well as updated and improved adaptations of more standard procedures involving the cell cycle and its regulation by oscillatory networks, exploring recent progress in the field from both holistic and reductionist perspectives.
This detailed book provides an accessible compendium of up-to-date methods in the fields of environmental toxicology, molecular toxicology, and toxicogenomics.
This second edition volume expands on the previous edition with discussions of recently developed techniques that use RNA scaffolds as molecular tools.
The book integrates mitochondria with other cellular components, discussing the dynamic properties of mitochondria with an emphasis on how these processes respond to signaling events and how they affect cellular metabolism.
Part I: Bioinformatic Tools to Study RNA Modifications 1. RNA Post-Transcriptional Modification Mapping Data Analysis Using RNA Framework Ilaria Manfredonia and Danny Incarnato 2. An Informatics Pipeline for Profiling and Annotating RNA Modifications Qi Liu, Xiaoqiang Lang, and Richard I. Gregory Part II: Detecting RNA Modifications Using Nanopore Direct RNA Sequencing 3. EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing Huanle Liu, Oguzhan Begik, and Eva Maria Novoa 4. Adaptation of Human Ribosomal RNA for Nanopore Sequencing of Canonical and Modified Nucleotides Miten Jain, Hugh E. Olsen, Mark Akeson, and Robin Abu-Shumays Part III: Next-Generation Sequencing Approaches to Detect and Capture Modified RNAs 5. AlkAniline-Seq: A Highly Sensitive and Specific Method for Simultaneous Mapping of 7-Methyl-Guanosine (m7G) and 3-Methyl-Cytidine (m3C) in RNAs by High-Throughput Sequencing Virginie Marchand, Lilia Ayadi, Valérie Bourguignon-Igel, Mark Helm, and Yuri Motorin 6. Transcriptome-Wide Detection of Internal N7-Methylguanosine Li-Sheng Zhang, Chang Liu, and Chuan He 7. miCLIP-MaPseq Identifies Substrates of Radical SAM RNA Methylating Enzyme Using Mechanistic Crosslinking and Mismatch Profiling Vanja Stojković, David E. Weinberg, and Danica Galonić Fujimori 8. Mapping RNA Modifications Using Photo-Crosslinking-Assisted Modification Sequencing Bryan R. Cullen and Kevin Tsai 9. Quantitative and Single Nucleotide Resolution Profiling of RNA 5-Methylcytosine Jun Li, Xingyu Wu, Trung Do, Vy Nguyen, Jing Zhao, Pei Qin Ng, Alice Burgess, Rakesh David, and Iain Searle 10. A Small RNA-Seq Protocol with Less Bias and Improved Capture of 2''-O-Methyl RNAs Erwin L. van Dijk and Claude Thermes Part IV: Assessing RNA Modifications Using qPCR- and Molecular Biology-Based Methods 11. Assessing 2''-O-Methylation of mRNA Using Quantitative PCR Brittany A. Elliott and Christopher L. Holley 12. Relative Quantification of Residue Specific m6A RNA Methylation Using m6A-RT-QPCR Ane Olazagoitia-Garmendia and Ainara Castellanos-Rubio 13. Monitoring the 5-Methoxycarbonylmethyl-2-Thiouridine (mcm5s2U) Modification Utilizing the Gamma-Toxin Endonuclease Jenna M. Lentini and Dragony Fu 14. Analysis of Queuosine tRNA Modifications Using APB Northern Blot Assays Cansu Cirzi an
This volume discusses the latest experimental and clinical approaches to study seizures and epilepsy. Chapters in this book cover detailed protocols for ex vivo and in vitro experimental models and widely-used in vivo (acute and chronic seizure) models in epilepsy research.
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